Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MIKRPIHLSHDFLAEVIDKEAITLDATMGNGNDTVFLAKS---SKKVYAFDIQEEAIAKTKAKLTEQGISNAELILDGHENLEQYV----HTPLRAAIFNLGYLPSADKTVITKPHTTIKAIKNVLDILEVGGRLSLMVYYGHDGGKSEKDAVIAFVEQLPQNNFATMLYQPLNQVNTPPFLIMVEKLQSYENEV
4PON Chain:A ((7-197))
MILKKILPYSKELLKMAAGEGDIVIDATMGNGHDTQFLAELVGENGHVYAFDIQESAVANTKERLGEAYQARTTLFHKSHDKIAKSLPPETHGKVAAAVFNLGN-----------GSSTIKAIEQLLSIMKDEGLIVLVVYHGN--------DVLDFCRNLDQQAARVLTYGFINQQNDPPFIVAIEKKAQ-----
General information:
TITO was launched using:
RESULT:
Template:
4PON.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107439 for 1288 contacts (-83.4/contact) +
2D Compatibility (PS) -17193 + (NN) -553 + (LL) 824
1D Compatibility (HY) -13600 + (ID) 3200
Total energy: -141161.0 ( -109.60 by residue)
QMean score : 0.567
(partial model without unconserved sides chains):
PDB file :
Tito_4PON.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PON-query.scw
PDB file :
Tito_Scwrl_4PON.pdb
: