Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKERELRRTMAVFPIGTVMKLTDLTARQIRYYEDQGLITPERT--EGNRRMFSLNDMDRLLEIKDFISDGLHISDIKNEYMQRQHKSKEKQKSLSDAEVRRLLQDELRNQGRFSSPSQHIGNMHL
1JBG Chain:A ((2-107))
-----------KYQVKQVAEISGVSIRTLHHYDNIELLNPSALTD-AGYRLYSDADLERLQQILFFKEIGFRLDEIKEMLDHPNFDRKAALQSQKEILMKKKQRMDEMIQTIDRTLLS-------
General information:
TITO was launched using:
RESULT:
Template:
1JBG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28236 for 612 contacts (-46.1/contact) +
2D Compatibility (PS) -11192 + (NN) -3456 + (LL) 1888
1D Compatibility (HY) -3200 + (ID) 900
Total energy: -45096.0 ( -73.69 by residue)
QMean score : 0.617
(partial model without unconserved sides chains):
PDB file :
Tito_1JBG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JBG-query.scw
PDB file :
Tito_Scwrl_1JBG.pdb
: