Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MADVKVVNNEDSRGQKQDLKAKLFHIKIGSVPLPVYVCLALLILLAGFLQKLPVNMLGGFAVILTMGWFLGTIGASIPGFK-NFGGPAILSLLVPSILVFFNLINKNVLESTNMLMKQANFLYFYIACLVSGSILGMNRKMLI-----QGLLRMIFPMLLGMVCAMMVGTFVGVILG-------LEWRHTLFYIVTPVLAGGIGEGILPLSLGYSSITGVASEQLVAQLIPATIIGNFFAILCTALLNRLGEKKPHLSGQGQLVRLNKGEDMSDIIADHSGPIDVKKMGGGVLTACSLFIFGHLLQQLTGFPGPVLMIVA-AAILKYI-NVIPRETQNGAKQLYKFISGNFTFPL----MAGLGLLYIP-LKDVVATLSIQYFIVVISVVF-TVISVGFFVSRFLNMNPVEAGIISACQSGMGGTGDVAILSTADRMNLMPFAQVATRLGGAITVITMT-AILRMLF- |
| 4Q9T Chain:A ((12-446)) | ----TKILTETEKYSVTKLSTDLSFLPFEG-------------LVDTALQKALVNDLDHIYI-----WNYNSIQKDTPICKISLHSSPPICLFTSSINGICIINKKN-----------SQFLYFE----DISTINNLAHVLDLKLKDNENITSTINCEPSGIIIATSLGRVLFITIKDSTGKPKLELKQQLIKPQNSFFFRNLDSSKEIISLKKGPIVGKGERLLYITTRGGSLQIWQLSIN---------------SKSFKRLEINIYEHVLDSLQDLY------PFAHGTL----AFLDSHPIYSDTSSAHLTLASISNGNEIYYLMITVILDEKTNSFQIFSIYKLNTYFTKSTVDLNHKPQLFIPNALDSIVSPTLSVYVLFNNAVVMTQISSKL--DSSFPLRRKWEDIIRF-------NKDVEIIGSGYS-------------TDSIYVICKDMGVLKIASH |
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General information:
TITO was launched using:
| RESULT:
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Template: 4Q9T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -352392 for 2834 contacts (-124.3/contact) +
2D Compatibility (PS) -37949 + (NN) 10689 + (LL) 7036
1D Compatibility (HY) -15600 + (ID) 3450
Total energy: -391666.0 ( -138.20 by residue)
QMean score : 0.083
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