Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKALTSSLLGLFAAPVLAGLLGAYVPLASAAPPKEIRIAVPDVSAGSSHSGGGVVDVLYTRQLLEKEFANDGIAVKWSFFKGAGPVVNEAFANGQVDFAYLGDLAAIIGKSG----------------GLDSRLLAATARGVNHYLGVQPGSGIKTLEDLKGKRVGI-FRGTASQLSFDNALASVGL-SEKDLKVINLDFSAALSALAARQIDA-TWGLAGLFALRDRGLAEIPLSTRDLNGAGTLQALLVGSGAFVDAHPDITERLLKVQLQAQDWLAREENRDAYIELVSKQA--SYPVVILQSEYRGR-KLGDALSPRLDAD-------------FLGRLDASIQAAKRFGLIRREFSAEQWAAP----ELLEAAGKLAKAKAVAQAAE---------------------------- |
| 2G29 Chain:A ((28-412)) | ------------NAPEVTTAKLGFIALTDAAP---LIIAKE-------------------KGFYAKYGMPDVEVLKQASWGTTRDNLVLGSASGGIDGAHILTPMPYLITMGTVTDGKPTPMYILARLNVNGQGIQLGNNYKDLKVGTDAAPLKEAFAKVTDPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTIVVPPAQMVANVKVNAMESFCVGEPWPLQTVNQGVGYQALTTGQLWKDHPEKAFGMR-ADWVDQNPKAAKALLMAVMEAQQWCDQAENKEEMCQILSKREWFKVPFEDIIDRSKGIYNFGNGQETFEDQEIMQKYWVDNASYPYKSHDQWFLTENIRWGYLPASTDTKAIVDKVNREDLWREAAQALEVPADQIPSSPSRGIETFFDGITFDPENPQAYLDSLKI |
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General information:
TITO was launched using:
| RESULT:
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Template: 2G29.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -157589 for 2651 contacts (-59.4/contact) +
2D Compatibility (PS) -33205 + (NN) -1049 + (LL) 1400
1D Compatibility (HY) -9600 + (ID) 2650
Total energy: -202693.0 ( -76.46 by residue)
QMean score : 0.385
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