Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSPPKIRRYIPADRDATLAIWLEASRVGHGFLGEAELQKQKALVRDHY-LDASETWLALD-GDTPLGFIGLLD-----AFIGGLFVAPTAHGRGIGRQLVEHAATLK-----GALEVEVYAANREALGFYARCGFVESGRRPRDDEGRALEIVQLRREH
3D8P Chain:A ((3-143))
---AINIIEYNRSYKEELIEFILSIQKNEFNIKIDRDDQPDLENIEHNYLNSGGQFWLAINNHQNIVGTIGLIRLDNNMSALKKMFVDKGYRNLKIGKKLLDKVIMTCKEQNIDGIYLGTIDKFISAQYFYSNNGFREIKRGDLPSSFPKLDNRFYYRNL
General information:
TITO was launched using:
RESULT:
Template:
3D8P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49181 for 904 contacts (-54.4/contact) +
2D Compatibility (PS) -13936 + (NN) -5510 + (LL) 152
1D Compatibility (HY) -6400 + (ID) 1200
Total energy: -76075.0 ( -84.15 by residue)
QMean score : 0.456
(partial model without unconserved sides chains):
PDB file :
Tito_3D8P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D8P-query.scw
PDB file :
Tito_Scwrl_3D8P.pdb
: