Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKNTEISFKLGVEFDETTADDRKVKSIVTLDG-GKLVHLQKWDGQETTL-VRELIDGKLILTLTHGTAVCTRTYEKEA
1VYF Chain:A ((2-135))
SMSSFLGKWKLSESHNFDAVMSKLGVSWATRQIGNTVTPTVTFTMDGDKMTMLTESTFKNLSCTFKFGEEFDEKTSDGRNVKSVVEKNSESKLTQTQV-DPKNTTVIVREVDGDTMKTTVTVGDVTAIRNYKRLS
General information:
TITO was launched using:
RESULT:
Template:
1VYF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29764 for 926 contacts (-32.1/contact) +
2D Compatibility (PS) -14574 + (NN) -2524 + (LL) 156
1D Compatibility (HY) -6400 + (ID) 2850
Total energy: -55956.0 ( -60.43 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_1VYF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VYF-query.scw
PDB file :
Tito_Scwrl_1VYF.pdb
: