Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLVLAVLLTVAAADSGISPRAVWQFRKMIKCVIPGSDPFLEYNNYGCYCGLGGSGTPVDELDKCCQTHDNCYDQAKKLDSCKFLLDNPYTHTYSYSCSGSAITCSSKNKECEAFICNCDRNAAICFSKAPYNKAHKNLDTKKYCQS
1VKQ Chain:A ((1-122))
----------------------ALWQFNGMIKCKIPSSEPLLDFNNYGCYCGLGGSGTPVDDLDRCCQTHDNCYMQAMKLDSCKVLVDNPYTNNYSYSCSNNEITCSSENNACEAFICNCDRNAAICFSKVPYNKEHKNLDMKN----
General information:
TITO was launched using:
RESULT:
Template:
1VKQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63832 for 905 contacts (-70.5/contact) +
2D Compatibility (PS) -12916 + (NN) -8259 + (LL) 2456
1D Compatibility (HY) -16400 + (ID) 4750
Total energy: -103701.0 ( -114.59 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_1VKQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VKQ-query.scw
PDB file :
Tito_Scwrl_1VKQ.pdb
: