Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
NLYQFKNMIHCTVPSRPWWHFADYGCYCGRGGKGTAVDDLDRCCQVHDNCYGEAEKLGCWPYLTLYKYECSQGKLTCSGGNNKCEAAVCNCDLVAANCFAGA--PYIDANYNVNLKERCQ
1GMZ Chain:A ((1-116))
DLWQFGKMILKETGKLPFPYYVTYGCYCGVGGRGGPKDATDRCCFVHDCCYGKL--TSCKPKTDRYSYSRKDGTIVCG-E-DPCRKEICECDKAAAVCFRENLDTYNKKYMSYLKS-LCK
General information:
TITO was launched using:
RESULT:
Template:
1GMZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77924 for 824 contacts (-94.6/contact) +
2D Compatibility (PS) -11861 + (NN) -6419 + (LL) 20
1D Compatibility (HY) -6400 + (ID) 2100
Total energy: -104684.0 ( -127.04 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_1GMZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GMZ-query.scw
PDB file :
Tito_Scwrl_1GMZ.pdb
: