Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTLLLLAVIMIFGLLQAHGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCFARNKTTYNKKYQYYSNKHCRGSTPRC
2QHD Chain:A ((1-122))
--------------------SVVELGKMIIQETGKSPFPSYTSYGCFCGGGERGPPLDATDRCCLAHSCCYDTL--PDCSPKTDRYKYKRENGEIICENSTSCKKRICECDKAVAVCLRKNLNTYNKKYTYYPNFWCKGDIEKC
General information:
TITO was launched using:
RESULT:
Template:
2QHD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44849 for 900 contacts (-49.8/contact) +
2D Compatibility (PS) -13244 + (NN) -9469 + (LL) 2596
1D Compatibility (HY) -10800 + (ID) 2900
Total energy: -78666.0 ( -87.41 by residue)
QMean score : 0.417
(partial model without unconserved sides chains):
PDB file :
Tito_2QHD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QHD-query.scw
PDB file :
Tito_Scwrl_2QHD.pdb
: