Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVLLLLAVVIMAFGSIQVQGSLLEFGQMILFKTGKRADVSYGFYGCHCGVGGRGSPKDATDWCCVTHDCCYNRLEKRGCGTKFLTYKFSYRGGQISCSTNQDSCRKQLCQCDKAAAECFARNKKSYSLKYQFYPNKFCKGKTPSC
1GMZ Chain:A ((1-122))
---------------------DLWQFGKMILKETGKLPFPYYVTYGCYCGVGGRGGPKDATDRCCFVHDCCYGKL--TSCKPKTDRYSYSRKDGTIVCG-E-DPCRKEICECDKAAAVCFRENLDTYNKKYMSYLKSLCKK--DDC
General information:
TITO was launched using:
RESULT:
Template:
1GMZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49806 for 870 contacts (-57.2/contact) +
2D Compatibility (PS) -13119 + (NN) -10158 + (LL) 3104
1D Compatibility (HY) -10400 + (ID) 3100
Total energy: -83479.0 ( -95.95 by residue)
QMean score : 0.284
(partial model without unconserved sides chains):
PDB file :
Tito_1GMZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GMZ-query.scw
PDB file :
Tito_Scwrl_1GMZ.pdb
: