Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESGPGCMSCKCVLS
1GNP Chain:A ((1-166))
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH-----------------------
General information:
TITO was launched using:
RESULT:
Template:
1GNP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98358 for 1359 contacts (-72.4/contact) +
2D Compatibility (PS) -18199 + (NN) -3515 + (LL) 488
1D Compatibility (HY) -23200 + (ID) 8300
Total energy: -151084.0 ( -111.17 by residue)
QMean score : 0.665
(partial model without unconserved sides chains):
PDB file :
Tito_1GNP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GNP-query.scw
PDB file :
Tito_Scwrl_1GNP.pdb
: