Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VRSLNSIVAVCQNMGIGKDGNLPWPPLRNEYKYFQRMTSTSHVEGKQNAVIMGKKTWFSIPEKNRPLKDRINIVLSRELKEAPKGAHYLSKSLDDALALLDSPELKSKVDMVWIVGGTAVYKAAMEKPINHRLFVTRILHEFESDTFFPEIDYKDFKLLTEYPGVPADIQEEDGIQYKFEVYQKSVLAQ
4DDR Chain:A ((1-185))
VGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEKN----
General information:
TITO was launched using:
RESULT:
Template:
4DDR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113078 for 1389 contacts (-81.4/contact) +
2D Compatibility (PS) -19968 + (NN) -7709 + (LL) 632
1D Compatibility (HY) -24000 + (ID) 6950
Total energy: -171073.0 ( -123.16 by residue)
QMean score : 0.758
(partial model without unconserved sides chains):
PDB file :
Tito_4DDR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DDR-query.scw
PDB file :
Tito_Scwrl_4DDR.pdb
: