Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGIIGAMEEEVTLLRDKIENRQTISLGGCEIYTGQLNGTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSSLMVESLVQKLAHG
4JOS Chain:A ((24-250))
KKIAILGAMEIEIQPILQKLEKYETVEYANNKYYVANYNGIELVVAYSKIGKVFSSLTATIMIEHFGVDALLFTGVAGGLQ-DLQVGDMIAATATVQHDVDITAFGYPYGKIPISEVEIATSARILEQAKVIAKELNLNLHTGVIATGDQFVHSAERKDFVVKEF-DAKAIEMEGASVNLICNEMNIPSFILRSISDTADGDAPDNFDEFAKMAANRSADFVMKLVDRI---
General information:
TITO was launched using:
RESULT:
Template:
4JOS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -173437 for 2052 contacts (-84.5/contact) +
2D Compatibility (PS) -24591 + (NN) -15389 + (LL) -264
1D Compatibility (HY) -18000 + (ID) 4150
Total energy: -235831.0 ( -114.93 by residue)
QMean score : 0.704
(partial model without unconserved sides chains):
PDB file :
Tito_4JOS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JOS-query.scw
PDB file :
Tito_Scwrl_4JOS.pdb
: