Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGIIGAMEEEVTLLRDKIENRQTITIGGSEIYTGQLHGVDVALLKSGIGKVAAATGATLLLERCQPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFKADDKLVAAAEDCIKALDLNAVRGLIVSGDAFINGSVALAKIRHNFPQAIAVEMEATAIAHVCHNFKVPFVVVRAISDVADQQSHLSFEEFLAVAARQSTLMVENLVQNLARG
4JWT Chain:A ((23-251))
MKIAIMGAMPEEISPILEKIGSYKSTSYAGNKYYEATYQGVELVIAYSKIGKVFSALSAATMIEHFGATKLLFSGVAGAISTNLKVGDLIVATKLSQHDLDITAFGHPYGYVPEGSVFVEADKDMIELSKKVALEMGKSVQEGIIATGDQFVANEERKNWIGTTF-GADALEMEGGSVGVVCNALNIPFFILRSISDAADMDASFSFDEFLESSAKESAEFIMKMVDELV--
General information:
TITO was launched using:
RESULT:
Template:
4JWT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -178254 for 2067 contacts (-86.2/contact) +
2D Compatibility (PS) -24848 + (NN) -17473 + (LL) -212
1D Compatibility (HY) -18400 + (ID) 3750
Total energy: -242937.0 ( -117.53 by residue)
QMean score : 0.594
(partial model without unconserved sides chains):
PDB file :
Tito_4JWT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JWT-query.scw
PDB file :
Tito_Scwrl_4JWT.pdb
: