Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKTRGLPKAKSHAPEVITSSPLK
2VWM Chain:B ((1-233))
IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVG--------GGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK---------------------
General information:
TITO was launched using:
RESULT:
Template:
2VWM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156496 for 1966 contacts (-79.6/contact) +
2D Compatibility (PS) -24684 + (NN) -8337 + (LL) 1332
1D Compatibility (HY) -32000 + (ID) 11200
Total energy: -231385.0 ( -117.69 by residue)
QMean score : 0.705
(partial model without unconserved sides chains):
PDB file :
Tito_2VWM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VWM-query.scw
PDB file :
Tito_Scwrl_2VWM.pdb
: