Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MESSFSFGVILAVLASLIIATNTLVAVAVLLLIHKNDG---VSLCFTLNLAVADTLIGVAISGLLTDQLSSPSRPTQK-TLCSLRMAFVTSSAAASVLTVMLITFDRYLAIKQPFRYLKIMSGFVAGACIAGLWLVSYLIGFLPLGIPMFQQTAYKGQCSF-------FAVFH-PHFVLTLSCVGFFPAMLLFVFFYCDMLKIASMHSQQIRKMEHAG----------------------------------------------------------------------------------------------------------------------------------AMA-------------GGYRSPRTPSDFKALRTVSVLIGSFALSWTPFLITGIVQVACQEC--HLYLVLERYLWLLGVGNSLLNPLIYAYWQKEVRLQLYHMALGVKKVLTSFLLFLSARNCGPERPRESSCHIVTISSSEFDG |
| 3EML Chain:A ((22-472)) | ----SVYITVELAIAVLAILGNVLVCW----AVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAITIS--T-GFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQ--SQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAI-VLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQ---------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3EML.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -232927 for 2077 contacts (-112.1/contact) +
2D Compatibility (PS) -29104 + (NN) -9817 + (LL) 2816
1D Compatibility (HY) -20800 + (ID) 3250
Total energy: -293082.0 ( -141.11 by residue)
QMean score : 0.307
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