Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDMADEPLNGSHTWLSIPFDLNGSVVSTNTSNQTEPYYDLTSNAVLTFIYFVVCIIGLCGNTLVIYVILRYAKMKTITNIYILNLAIADELF-MLGLPFLAMQVALVHWPFGKAICRVVMTVDGINQFTSIFCLTVMSIDRYLAVVHPIKSAKWRRPRTAKMITMAVWGVSLLV-ILPIMIYAGLRSNQWGRSSCTINWPGESG-AWYTGFIIYTFILGFLVPLTIICLCYLFIIIKVKSSGIRVG-SSKRKKS------EKKVTRMVSIVVAVFIFCWLPFYIFNVSSVSMAISPTPALKGMFDFVVVLTYANSCANPILYAFLSDNFKKSFQNVLCLVKVSGTDDGERSDSKQDKSRLNETTETQRTLLNGDLQTSI |
| 2Y00 Chain:B ((11-299)) | ------------------------------------------EAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISALVSFLPIMMH-WWRDEDPQALKCYQD-PGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNW---LGYANSAMNPIIYC-RSPDFRKAFKRLLA----------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Y00.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -221153 for 2043 contacts (-108.2/contact) +
2D Compatibility (PS) -27799 + (NN) 829 + (LL) 4008
1D Compatibility (HY) -26800 + (ID) 4650
Total energy: -275565.0 ( -134.88 by residue)
QMean score : 0.276
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