Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVMPDKWIREKAES-FGMIEPFVDHKSSKGVMSFGLSSYGYDARVDNKFKIFTNVNSAVVDPKDFSK--NSFIDK-ETDVCIIPPNSFALASTVEYFHIPRDVLAICVGKSTYARCGIIVN--VTPLEPGWKGHVTLEFSNTTPLPAKIYANEGACQFVFLSGESECEKSYDD--IKGKYMNQHGITLPLVK
2QXX Chain:A ((1-182))
-MLLSDRDLRAEISSGRLGIDPFDDTLVQP---------SSIDVRLDCLFRVFNNTRYTHIDPAKQQDELTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGFIDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLRLTSPSEHPYGSSRAGSKYQGQRGPTPSRSY
General information:
TITO was launched using:
RESULT:
Template:
2QXX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85741 for 1251 contacts (-68.5/contact) +
2D Compatibility (PS) -18666 + (NN) -5299 + (LL) 488
1D Compatibility (HY) -8000 + (ID) 2500
Total energy: -119718.0 ( -95.70 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_2QXX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QXX-query.scw
PDB file :
Tito_Scwrl_2QXX.pdb
: