Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MMFNFPNTRLRRRRSSKWVRNLT-SESALSVNDLIFPLFVHDREETTELVSSLPGMKCYSIDGLVSIAQEAEDLGINAVAIFPVVDSKLKSENAEEAYNSDNLICKAIRAIKLKVPGIGIIADVALDPYTTHGHDGILKSNQIDVENDKTVSILCKQALALAKAGCNIVASSDMMDGRVGRIRKVLDDNNLQD-VSILSYAVKYCSSFYAPFRQIVGSCVSSNSIDKSGYQMDYRNAREAICEIEMDLNEGADFIMVKPGMPYLDIIKMASDEF-NFPIFAYQVSGEYAMIKAATNNGWLDYDKVIYESLVGFKRAGASAIFTYAALDVAKNLR |
| 1PV8 Chain:A ((11-328)) | -------------YLHPLLRAWQTATTTLNASNLIYPIFVTDVPDDIQPITSLPGVARYGVKRLEEMLRPLVEEGLRCVLIFGVP--------------EESPAIEAIHLLRKTFPNLLVACDVCLC----------------AFRAEESRQRLAEVALAYAKAGCQVVAPSD--DGRVEAIKEALMAHGLGNRVSVMSYSAKFASCFYGPFRDAA---------------LPPGARGLALRAVDRDVREGADMLMVKPGMPYLDIVREVKDKHPDLPLAVYHVSGEFAMLWHGAQAGAFDLKAAVLEAMTAFRRAGADIIITYYTPQLLQWLK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PV8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -233873 for 2221 contacts (-105.3/contact) +
2D Compatibility (PS) -29930 + (NN) -11632 + (LL) 2600
1D Compatibility (HY) -20800 + (ID) 4700
Total energy: -298335.0 ( -134.32 by residue)
QMean score : 0.585
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