Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLIPIVIEQTSRGERAYDIYSRLVKERIIFVTGPVEDNMASVIVAQLLFLESENPDKDIYMYINSPGGVVTAGLSIYDTMQYIKPDVSTLCIGQAASMGSLLLAAGTEGKRYSLPHSRIMIHQPSGGYQGQATDIEIHANEILRVKRKLNQIYEKHTGNSLKKIEGMMERDKFMDPEEARRIGLIDRVIAERKDIKVENIKVEQKVG
1YG6 Chain:I ((10-193))
----------TSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN--------------
General information:
TITO was launched using:
RESULT:
Template:
1YG6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103839 for 1330 contacts (-78.1/contact) +
2D Compatibility (PS) -19954 + (NN) -9555 + (LL) 2500
1D Compatibility (HY) -24000 + (ID) 6250
Total energy: -161098.0 ( -121.13 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_1YG6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YG6-query.scw
PDB file :
Tito_Scwrl_1YG6.pdb
: