Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNINNRIGIYPGTFDPITFGHIDIIKRACKLVDRLIIGVAENINKHTTFDAKLRTSMAENEIKRLEIDVDVVSFNGLLVKFAKEQNASVIIRGLRAVSDFDYEFQMSWVNYKLLPEIETIFLPASEDTQFISSSFVKEIARLGESVSKFVSVGVQKELINLNRIGSE
3ND6 Chain:D ((3-155))
-----KIALFPGSFDPMTNGHLNLIERSAKLFDEVIIGVFI------LFTPEEKKYLIEEATKEMPNVRVIMQETQLTVESAKSLGANFLIRGIRNVKDYEYEKDIAKMNQHLAPEIETVFLLAEEPYAHVSSSLLKEVLRFGGDVSDYLPPNIYHALKQK------
General information:
TITO was launched using:
RESULT:
Template:
3ND6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100380 for 1121 contacts (-89.5/contact) +
2D Compatibility (PS) -15358 + (NN) -3286 + (LL) 900
1D Compatibility (HY) -12000 + (ID) 2750
Total energy: -132874.0 ( -118.53 by residue)
QMean score : 0.478
(partial model without unconserved sides chains):
PDB file :
Tito_3ND6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ND6-query.scw
PDB file :
Tito_Scwrl_3ND6.pdb
: