Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MERVLITGGAGFIGSH-LVDDLQQDYDVYVLDNYRTGKREN---IKSLADDH--VFELDIREYDAVEQIMKTYQFDYVIHLAALVSVAESVEKPILSQEINVVATLRLLEIIKKYNSHIKRFIFASSAAVYGDLPDLPKSDQ-SLILPLSPYAIDKYYGERTTLNYCSLY-NIPTAVVKFFNVFG--PRQDPKSQYSGVISKMFD-----SFEHNKPFTFFG------DGLQTRDFVYVYDVVQSVRLIME---HKDAIGHGYNIGTGTFTNLLEVYRIIGELYGKSVEHEFKEARKGDIKHSYADISNL-KALGFVPKYTVETGLKDYFNFEVDNIEEVTAKEVEMS |
| 1UDB Chain:A ((2-329)) | --RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAAN--VKNFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGV-HIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQ--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1UDB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -176919 for 2586 contacts (-68.4/contact) +
2D Compatibility (PS) -31992 + (NN) -6801 + (LL) 1636
1D Compatibility (HY) -18000 + (ID) 5250
Total energy: -237326.0 ( -91.77 by residue)
QMean score : 0.452
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