Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKVRQATEKDVVQIRDVATKAWFNTYLNIY---AATTVNHLLEASYNEHHLKKRLQEQLFLVVEEGNDIVGFANFIYG---------------------------------EELYLSAHYVKPESQHTGYGTALLNEGLSRFEDKF-EGVYLEVDNKNEEAVAYYKEQGFTILRSYQPEMYGEKLDLALMYKAF
1U6M Chain:A ((2-177))
-SLIRSATKEDGQAIARLVLVILKDMELPILEEVSEEQMIDLLAEATAYPTY--RYGYQRILVYEHAGEVAGIAVGYPAEDEKIIDEPLREVFKKHGLAEDVRLFIEEETLPNEWYLDTISVDERFRGMGIGSKLLDALPEVAKASGKQALGLNVDFDNPGARKLYASKGFKDVTTMTI----------------
General information:
TITO was launched using:
RESULT:
Template:
1U6M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54716 for 949 contacts (-57.7/contact) +
2D Compatibility (PS) -14547 + (NN) -2091 + (LL) 1972
1D Compatibility (HY) -6800 + (ID) 1600
Total energy: -77782.0 ( -81.96 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_1U6M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U6M-query.scw
PDB file :
Tito_Scwrl_1U6M.pdb
: