Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGG-----QMANTEEVENFPGFEM-ITGPDLSTKMFEHAKKFGAVYQYGDIKSVE-DKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGA--FFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA |
| 4UP3 Chain:B ((6-312)) | ------DVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTIITETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRMHVPGEDKYWQNGVSASAICDGAVPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRASKTMQERVLNHPKIEVIWNSELVELEGDGDLLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLGGQVKTADDGYILTEGP-KTSVDGVFACGDVQDRVYRQAIVAAGSGCMAALSCEKWLQ------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4UP3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -151789 for 2535 contacts (-59.9/contact) +
2D Compatibility (PS) -31589 + (NN) -5819 + (LL) 1160
1D Compatibility (HY) -22000 + (ID) 6000
Total energy: -216037.0 ( -85.22 by residue)
QMean score : 0.486
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