Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYLLSAGICMAIVSILLIGMAISNVSKGQYAKRFFFFATSCLVLTLVVVSSLSSSANASQTDNGVNRSGSEDPTVYSATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENANKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ
4DF7 Chain:A ((7-135))
-------------------------------------------------------------------------------------LHKEPATLIKAIDGDTLKLMYKGQPMTFRLLLVDTPEFN------EKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMINEALVRQGLAKVAYVYKGNNTHEQLLRKAEAQAKKEKLNIWS--------
General information:
TITO was launched using:
RESULT:
Template:
4DF7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48892 for 1031 contacts (-47.4/contact) +
2D Compatibility (PS) -13697 + (NN) -2834 + (LL) 6020
1D Compatibility (HY) -16000 + (ID) 6100
Total energy: -81503.0 ( -79.05 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_4DF7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DF7-query.scw
PDB file :
Tito_Scwrl_4DF7.pdb
: