Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANYPQLNKEVQQGEIKVVMHTNKGDMTFKLFPNIAPKTVENFV-----------THAKNGYYDGITFHRVINDFMIQGGDPT-ATGMGGESIYGGAFEDEFSLNAFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQDKPLHDVVIESIDVEE
1C5F Chain:C ((21-170))
------------------------GRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTP----------------------------APHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVI-------
General information:
TITO was launched using:
RESULT:
Template:
1C5F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39934 for 1027 contacts (-38.9/contact) +
2D Compatibility (PS) -14643 + (NN) -7098 + (LL) 3292
1D Compatibility (HY) -9600 + (ID) 3350
Total energy: -71333.0 ( -69.46 by residue)
QMean score : 0.444
(partial model without unconserved sides chains):
PDB file :
Tito_1C5F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1C5F-query.scw
PDB file :
Tito_Scwrl_1C5F.pdb
: