Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVASLTTLPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGAAGAKNAGILAARMLSIQNPSLVEKLNQYESSLIQKVEDMQNELQ
1O4V Chain:A ((14-171))
PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNA--KNAGILAASILGIKYPEIARKVKEYKERMKREVLEKAQRLE
General information:
TITO was launched using:
RESULT:
Template:
1O4V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132458 for 1298 contacts (-102.0/contact) +
2D Compatibility (PS) -17145 + (NN) -5683 + (LL) -28
1D Compatibility (HY) -17600 + (ID) 4400
Total energy: -177314.0 ( -136.61 by residue)
QMean score : 0.644
(partial model without unconserved sides chains):
PDB file :
Tito_1O4V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1O4V-query.scw
PDB file :
Tito_Scwrl_1O4V.pdb
: