Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------MTKLFIPYIM----GNKDLIENATLLSENGADIIEIGVPFSDPVADGPVIMEAGQQAIKQGITIDYIFNQLEKHGDQIKCN-YVLMTYYNIICHYGEQAFFEKCRDTGVYGLIIPDLPYELSQRLKQQFSHYGVKIISLVAMTTDDKRIKDIVSHAEGFIYTVTMNATTGQNGAFHPELKRKIESIKAIANVPVVAGFGIRTPQHVADIKEV-ADGIVIGSEIVKRFK------SNTREEIIRYLQSIQQTLNN
2TYS Chain:A ((1-268))
MERYENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLS-------------PLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIEKNLASPKQMLAELRSFVSAMKAASRA
General information:
TITO was launched using:
RESULT:
Template:
2TYS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -183550 for 1894 contacts (-96.9/contact) +
2D Compatibility (PS) -25507 + (NN) -10015 + (LL) 252
1D Compatibility (HY) -11200 + (ID) 3250
Total energy: -233270.0 ( -123.16 by residue)
QMean score : 0.691
(partial model without unconserved sides chains):
PDB file :
Tito_2TYS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2TYS-query.scw
PDB file :
Tito_Scwrl_2TYS.pdb
: