Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIGIIGAMEEEVTILKNKLTQLSEISVAHVKFYTGILKDREVVITQSGIGKVNAAISTTLLINKFKPDVIINTGSAGALDESLNVGDVLISDDVKYHDADATAFGYEYGQIPQMPVAFQSSKPLIEKVSQVVQQQQLTAKVGLIVSGDSFIGSVEQRQKIKKAFPNAMAVEMEATAIAQTCYQFNVPFVVVRAVSDLANGEAEMSFEAFLEKAAVSSSQTVEALVSQL
3MMS Chain:A ((3-229))
-IGIIAAMPEELAYLVQHLDNAQEQVVLGNTYHTGTIVSHEVVLVESGIGKVMSAMSVAILAVHFQVDALINTGSAGAVAEGIAVGDVVIADKLAYHDVDVTAFGYAYGQMAQQPLYFESDKTFVAQIQESL----QNWHLGLIATGDSFVAGNDKIEAIKSHFPEVLAVEMEGAAIAQAAHALNLPVLVIRAMSDNANHEANIFFDEFIIEAGRRSAQVLLAFLKAL
General information:
TITO was launched using:
RESULT:
Template:
3MMS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130772 for 2016 contacts (-64.9/contact) +
2D Compatibility (PS) -24233 + (NN) -10106 + (LL) 688
1D Compatibility (HY) -20000 + (ID) 4900
Total energy: -189323.0 ( -93.91 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_3MMS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MMS-query.scw
PDB file :
Tito_Scwrl_3MMS.pdb
: