Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKLLLPLIIMLLVLAACGNQGEKNNKAETKSYKMDDGKTVDIPKDPKRIAVVAPTYAGGLKKLGANIVAVN-------QQVDQSKVLKDKFKGVTKIGDGDVEKVAKEKPDLIIVY-----STDKDIKKYQKVAPTVVVDYNKHKYLEQQEMLGKIVGKEDKVKAWKKDWEETTAKDGKEIKKAIGQDATVSLFDEFDKKLYTYGDNWGRGGEVLYQAFGLKMQPEQQKLTAKAG----WAEVKQEEIEKYAGDYIV-STSEGKPTPGYESTNMWKNLKATKEGHIVKVDAGTYWYNDPYTLDFMRKDLKEKLIKAAK------- |
| 3R5T Chain:A ((3-298)) | --------------------------NVWPRTFQNADGSITTIPSQPKRILSTAVTVTGTLLAIDAPVIASAATTQSTFFEQWRKLAELRQVKKLWPAGSVDLESVYVEQPDLIVVSMIGADSARDQIPLLQAIAPTILVDYSDQTWQSLAQQLGLATGLEEQAERTIHNFEQWTKQVRDVLDLP-KGRANIVSYHGPGVVNAVAKAQSAHA--QLLQSVGVVLEEPDPAWQAGSIVHRDFLRIHYEHLTQLQAETTFLITMTDQQAQAFLHDPILKNLPSIQRKQVYGLGENS-FRIDLFSAREIINSLLRRFAGEQAQSLVMPL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3R5T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -38261 for 2244 contacts (-17.1/contact) +
2D Compatibility (PS) -29176 + (NN) -10788 + (LL) 2512
1D Compatibility (HY) -9200 + (ID) 2600
Total energy: -87513.0 ( -39.00 by residue)
QMean score : 0.411
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