Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------------------------MTKYKIDFSKGLVPAILQDNQTKQVL-MLGYMN-QEAFDKTIEDGVVCFYSRSKQRLWTKGETSGHTQL-VKDIHVDCDNDTILIDVIPN-GPTCHTGSQSCFNTEVPFSVQTLAQTVQDSAQSNNEKSYTKYLL--------TEGIEKITKKYGEEA-------------FEVVI-------EAIKGDKKAFVSEVAD-ELYHLFV-------------LMHALGVD-F-SEIEAELARRH-HK---RNNFKGERQNIEQW--- |
| 3KDR Chain:A ((7-297)) | AVTTRAEALTIPAVLRARNLLSTTVARTPLVCDGTLPPFVPVAAPPGAATMQTPFHRMLATADDLLFNGVACWALDRDES----GTCIGAIHIPLDTWQIEENTVRVNGKAVDPMEVCIFVGIHGGLLTHASETFTDARNLVRAAARVAQNPAALIELRQTNNAQLSPDDVDRIINGYVAARRGRNSGVGFSSSGLEVHEHEMAKENLLIEGRNAAAVDVARAMNVPAAFIDATVGQNAASRMIELVTFGVEPLMSAIEARLNQPDMHADHLANPLKFDPAALLDAIPT |
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General information:
TITO was launched using:
| RESULT:
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Template: 3KDR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -20231 for 1238 contacts (-16.3/contact) +
2D Compatibility (PS) -21390 + (NN) -1999 + (LL) 448
1D Compatibility (HY) -3600 + (ID) 1600
Total energy: -48372.0 ( -39.07 by residue)
QMean score : 0.140
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