Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKLENV--FVKKGNKNI--LDGCNFNFEKGKSYALVGESGAGKSTLLNIIAGFEDVSQGSIYIEDK----LLKKKVDFYRYTLGYLFQNFALLENQTISQNLDLALKFKKNKKDNMNLK-KEVLKKVGLDLDIKRIVSSLSGGEQQRVALARLILKDPKIILADEPTGSLDTKNGKIVIDLLLKLLDENK----TMIVVTHDLELAKRF-DVIVNISELRS
3TUI Chain:H ((24-238))
MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILEL---LKDINRRLGLTILLITHEMDVVKRICDCVAVIS----
General information:
TITO was launched using:
RESULT:
Template:
3TUI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128704 for 1522 contacts (-84.6/contact) +
2D Compatibility (PS) -22110 + (NN) -11739 + (LL) 768
1D Compatibility (HY) -20000 + (ID) 3550
Total energy: -185335.0 ( -121.77 by residue)
QMean score : 0.543
(partial model without unconserved sides chains):
PDB file :
Tito_3TUI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TUI-query.scw
PDB file :
Tito_Scwrl_3TUI.pdb
: