Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------------------------------------MIQIHHANAFEIIKDFHQQNLKVDAIITDPPYNISVKNNFSTLKSAKRQGIDFGEWDKNFKLLEWIARYASLINPNGCMVIFCSYRFISYIADFLEENGFVVKDFIQWVKNNPMPRNIHRRYVQDTEFALWAVKKKAKWVFNKPKNEKYLRPLILKSPVVSGIE-------------RVKHPTQKSLTLMEKIISTHTNPNDTVLDPFMGSGTTGL--ACKNLKRNFIGIESEKEYFQIAQKRLS------------------------------------------------------------------------------------------------------ |
| 3TM4 Chain:A ((1-370)) | MKFLLTTAQGIEDIAKREVSLLLKKLGISFQIEEKPLGIEGRLLLEAEKAYYV--DEKGRKRELSISTYLNENSRLLHRVIIEIASEKFNGIEK---DESEEALKRIKDFVS------------SLPVEQFVK---VSETFAVRSFRK--GDHNITSIDIARTVGEAIFERLSRFGTPLV--NLDHPAVIFRAELIKDVFFLGIDTTGDSSLHKRPWRVYDHPAHLKASIANAMIELAELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPYGSMIPDLYMKFFNELAKVLEKRGVFITTEKKAIEEAIAENGFEIIHHRVIGHGGLMVHLYVVKLEHHH |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TM4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -22689 for 1370 contacts (-16.6/contact) +
2D Compatibility (PS) -21727 + (NN) -2307 + (LL) 2016
1D Compatibility (HY) -8800 + (ID) 1950
Total energy: -55457.0 ( -40.48 by residue)
QMean score : 0.230
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