Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MFKRLRRLRSSENLRAMVR-ETRLNINDFIAPLFVIESDSGIKNEISSMPGVYQMSIEPLLKECEELVGLGIKAVLLFGIPKHKDATGSHALNKDHIVAKATREIKKRFKDLIVIADLCFCEYTDHGHCGILENASVSNDKTLKILNLQGLILAESGVDILAPSNMMDGNVLSLRKALDKAGYFH-TPIMSYSTKFASSYYGPFRDVANSPPSFGDRKSYQMDYANQKEALLESLEDEKQGADILMVKPALAYLDIVKEIRDHT-LLPLALYNVSGEYAMLKLAQKHNLINYESVLLETMTCFKRAGADMIISYHAKEVANLLQRN |
1PV8 Chain:A ((11-330)) | --------YLHPLLRAWQTATTTLNASNLIYPIFVTDVP-DDIQPITSLPGVARYGVKRLEEMLRPLVEEGLRCVLIFGVP------------EESPAIEAIHLLRKTFPNLLVACDVCLC--------------AFRAEESRQRLAEVALAYAKAGCQVVAPSD--DGRVEAIKEALMAHGLGNRVSVMSYSAKFASCFYGPFRDAA-------------LPPGARGLALRAVDRDVREGADMLMVKPGMPYLDIVREVKDKHPDLPLAVYHVSGEFAMLWHGAQAGAFDLKAAVLEAMTAFRRAGADIIITYYTPQLLQWLKEE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PV8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -175032 for 2239 contacts (-78.2/contact) +
2D Compatibility (PS) -30142 + (NN) -17673 + (LL) 2156
1D Compatibility (HY) -23200 + (ID) 5200
Total energy: -249091.0 ( -111.25 by residue)
QMean score : 0.599
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