Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSTLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKMLKKYLKDERSTYLDNNIRFRAIGDLEGFSKELRDTILRLENDTRYFKDFTQVLALNYGSKNELSRAFKSLLENPPN-HINNIESLENEISHRLDTHDLP----EVDLLLRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFGELKC
4Q9M Chain:B ((16-239))
------HIGIIMDGNGRWAKKRMQPRVFGHKAGMEALQTVTKAANKLGVKVITVYAFSTENWTRPDQEVKFIMNLPVEFYDNYVPELHANNVKIQMIGETDRLPKQTFEALTKAEELTKNNTGLILNFALNYGGRAEITQALKLISQDVLDAKINPGDITEELIGNYLFTQHLPKDLRDPDLIIRTSGELRLSNFLPWQGAYSELYFTDTLWPDFDEAALQEAILAYNRR---------
General information:
TITO was launched using:
RESULT:
Template:
4Q9M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102054 for 1730 contacts (-59.0/contact) +
2D Compatibility (PS) -22486 + (NN) -1732 + (LL) 1112
1D Compatibility (HY) -14800 + (ID) 4200
Total energy: -144160.0 ( -83.33 by residue)
QMean score : 0.374
(partial model without unconserved sides chains):
PDB file :
Tito_4Q9M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Q9M-query.scw
PDB file :
Tito_Scwrl_4Q9M.pdb
: