Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQSHQNLQSQFFIEHILQILPHRYPMLLVDRIIELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQTGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE
3DOY Chain:D ((9-159))
--------QSQFFIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE
General information:
TITO was launched using:
RESULT:
Template:
3DOY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112944 for 1145 contacts (-98.6/contact) +
2D Compatibility (PS) -15787 + (NN) -2552 + (LL) 664
1D Compatibility (HY) -24000 + (ID) 7450
Total energy: -162069.0 ( -141.54 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_3DOY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DOY-query.scw
PDB file :
Tito_Scwrl_3DOY.pdb
: