Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPNLENLDWKNLGFSYIKTDFRFIATYKNGSWSQGELVSENALQLSEGSPVLHYGQACFEGLKAYRSQKGKALLFRPLENAKRLQTSCERLLMPKVSEELFLKACAEVIKANQKWLAPYKSGASLYLRPFVIGVGDNLGV-KPASEYLFIVFCAPVGAYFKGGIEKGGARFITTAFDRAAPKGTGGVKVGGNYAASLLAHKIATEQGYDDCIYLDPTTHTKIEEVGAANFFGI-THDDAFITPHSPS----ILPSVTRKSLMVLAKEHLKLKVEEREILIDEL------GAFKEAGACGTAAIITPIKEIAHNNKSY---SFEAPGNITKQLYDLLLSIQQGEQEAPKDWIFEVG |
| 1EKP Chain:A ((28-365)) | -----------LVFGKTFTDHMLMVEWNDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWV-PDAAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILC-PVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDH-QLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKDRNLHIPTMENGPELILRFQKELKEIQYGIRA--HEWMFPV- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1EKP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -142857 for 2552 contacts (-56.0/contact) +
2D Compatibility (PS) -34752 + (NN) -12620 + (LL) 600
1D Compatibility (HY) -28400 + (ID) 5350
Total energy: -223379.0 ( -87.53 by residue)
QMean score : 0.479
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