Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVIKDAHFLTSSNNLSQCPASLTSEMVILGRSNVGKSTFINTLLGKNLAKSSATPGKTRLANFFSTTWEDKENALTTTFNVIDLPGFGYAKVSKSLKKEWEGFLWELLSVRVSIKLFIHLIDARHLDLEIDKNAKENIQALLRPDQAYLSLFTKFDKLNKNEQHRLFLNAPKPF---LINTIHFNALSSKYPTLEIVRQTLLKYLLTNPL
1PUI Chain:A ((11-196))
--------FVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQ------------QLINLFEV---------ADGKRLVDLPGYG------EMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMI---EWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGV----DKLRQKLDTWFS
General information:
TITO was launched using:
RESULT:
Template:
1PUI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97132 for 1270 contacts (-76.5/contact) +
2D Compatibility (PS) -17746 + (NN) -6518 + (LL) 3232
1D Compatibility (HY) -4000 + (ID) 2350
Total energy: -124514.0 ( -98.04 by residue)
QMean score : 0.353
(partial model without unconserved sides chains):
PDB file :
Tito_1PUI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PUI-query.scw
PDB file :
Tito_Scwrl_1PUI.pdb
: