Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MKSTGMVRKID-----ELGRVVIPIEIRRTMNLNV-----KDPLEIFTDEDAIILKKYSAGLVCDVTG-----EFSVDNKKFVDGK-LTLSKEGAAALMEEIKRRFGDTL-----
2HW4 Chain:A ((18-141))
LYFQSMDLALIPDVDIDSDGVFKYVLIRVHSAESKEIVRGYKWAEYHADIYDKVSGDMQKQ---GCDCECLGGGRISHQSQDKKIHVYGYSMAYGPAQHAISTEKIKAKYPDYEVTWAN
General information:
TITO was launched using:
RESULT:
Template:
2HW4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10942 for 605 contacts (-18.1/contact) +
2D Compatibility (PS) -10040 + (NN) -1412 + (LL) 208
1D Compatibility (HY) -2400 + (ID) 900
Total energy: -25486.0 ( -42.13 by residue)
QMean score : 0.416
(partial model without unconserved sides chains):
PDB file :
Tito_2HW4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HW4-query.scw
PDB file :
Tito_Scwrl_2HW4.pdb
: