Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRIWIKSLLVITACIFSLTLLNT-K-YTFYSPTVKLESAKVVYKLNNEPFNVRLDVPL-VNQ----MDAPTLFNGCEVTSLA-------------MLLQF-NGKRVTKNELANNLSTTPIEQNGL-HGNPDK-----AFVGSISGDSPGLGVNHAPIAKLAAKYV--NEAHVHDISGNS-I-QDIITVLSTGAPVWIITTTDYHAPKNWQTVQTKEGKKKITY---SMHSVIITGFDKNN---FYI-----NDPYGHKNRAVKRSVLEEGWSAMGK------QAIYLSRP----- |
| 3GN6 Chain:A ((22-321)) | FNPWTDAALDTIVN-QALTLYAEMRVVPAHHDAFLAAIDTVSAKLRVLPGFLSLALKQMSGDSTMVKNYPETYKGVLATAYLDGVAAGTQPYFYNLFVRFADGRAARAAGFEALFETHIHPLLHAMADGPELLAYRAVLQSVVAGDRHAIYRGAEEIRSFLRRPVELPERETVTVENHVMVPEDKHAAWEPQVAILLQVAQDTFEPQDEPSGVGLPGARDNRYYRKALSTEILRNAHADGGLRAYIMHGVWESVWDHENSHLDPRFLAAAGPVGAAAVVGPVEPFYLTRRLVVAD |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GN6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -38224 for 1697 contacts (-22.5/contact) +
2D Compatibility (PS) -25259 + (NN) -4563 + (LL) 204
1D Compatibility (HY) -3600 + (ID) 1800
Total energy: -73242.0 ( -43.16 by residue)
QMean score : 0.235
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