Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----LKKMMVMGSVGCGKTTLCQKLHGYDI-------------LYKKTQAVEYFQEMIDTPGEFVQHRQLYSALTVTAA-----DASVIAILQSVTEKKQTFSPMFASIFA--KPVIGIVTKVDLAESDKDIERAERELRMAGA-KHIFYISSVEETGIEELRAYLED-----------
1EGA Chain:A ((4-182))
DKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPE
General information:
TITO was launched using:
RESULT:
Template:
1EGA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61157 for 1025 contacts (-59.7/contact) +
2D Compatibility (PS) -15797 + (NN) -3116 + (LL) 0
1D Compatibility (HY) -8400 + (ID) 1600
Total energy: -90070.0 ( -87.87 by residue)
QMean score : 0.471
(partial model without unconserved sides chains):
PDB file :
Tito_1EGA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EGA-query.scw
PDB file :
Tito_Scwrl_1EGA.pdb
: