Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDTPDYKRVVLKLSGEALAGNDGFGINPSVVNLISAQIKEVVELGVEVAIVVGGGNIWRGKLGSEMGMDRAAADQMGMLATIMNSLSLQDSLENIGVATRVQTSIDMRQIAEPYIRRKAIRHLEKGRVVIFAGGTGNPYFSTDTAAALRAAEIEADVILMAKNNVDGVYNADPKLDENAKKYEELSYLDVIKEGLEVMDTTASSLSMDNDIPLIVFSFTEQGNNIKRVILGEKIGTTVRGKK
3NWY Chain:A ((47-280))
--LSGYSRVLLKLGGEMFGGGQ-VGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNF---AQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMA-KAVDGVFAE-----PEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDG-NIARAVRGEKIGTLVT---
General information:
TITO was launched using:
RESULT:
Template:
3NWY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -173063 for 1913 contacts (-90.5/contact) +
2D Compatibility (PS) -25058 + (NN) -13039 + (LL) -68
1D Compatibility (HY) -24400 + (ID) 6050
Total energy: -241678.0 ( -126.33 by residue)
QMean score : 0.577
(partial model without unconserved sides chains):
PDB file :
Tito_3NWY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NWY-query.scw
PDB file :
Tito_Scwrl_3NWY.pdb
: