Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSKLTKIQETLGKEKIEAVLVTSEFNRRYVSGFTGT----SGVALILPEKAYFVTDFRYTEQAAKQAE-GYEIV--QHTGPIFDTVEDLLIKN--DTKTLHFEADYVTVSEFKQMERVFNR-QLIPLTGFFEEMRKVKTASELKAIRTACDIADAAFAHIIQFIKPGMAEIEVSNELEFFMRRAGATS------SSFDTIVASGIRSALPHGVASDKKIEVGDFVTMDYGCYYDGYCSDMTRTIAVGEPAEKLKEIYQITLDAQLKVIDSLKPGMTGIEADAIARDYISSFGYGDAFGHSLGHGIGLEIHEGPNL-----SFKSPQKLEVGHVVTDEPGIYLP----GIGGVRIEDDLLITETGNEILIHSPKELIIL |
1CHM Chain:A ((24-397)) | ANRQARLRAHLAAENIDAAIFTSYHNINYYSDFLYCSFGRPYALVVTEDDVISISANIDGGQPWRRTVGTDNIVYTDWQR---DNYFAAIQQALPKARRIGIEHDHLNLQNRDKLAARYPDAELVDVAAACMRMRMIKSAEEHVMIRHGARIADIGGAAVVEALGDQVPEYEVALHATQAMVRAIADTFEDVELMDTWTWFQSGINTDGAHNPVTTRKVNKGDILSLNCFPMIAGYYTALERTLFLDHCSDDHLRLWQVNVEVHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFGTLSHYYGREAGLELREDIDTVLEPGMVVSMEPMIMLPEGLPGAGGYREHDILIVNENGAENITKFPYGPEK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1CHM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -147292 for 2884 contacts (-51.1/contact) +
2D Compatibility (PS) -37407 + (NN) -8470 + (LL) 372
1D Compatibility (HY) -10400 + (ID) 3750
Total energy: -206947.0 ( -71.76 by residue)
QMean score : 0.492
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