Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTIGIIGAMEEEVELLKNSMSSVEEIVIGGAKFYIGEIASKEVVLLESGIGKVNAALGTTLMADRFKPEVIINTGSAGGMAEGLAVGDVIISDRLAYGDVDVTEFGYTYGQVPRMPAFYQGDAVLLKKAETIYREYFATSENKAVYGLVVTNDSFIMRPDQHEIIRTFFPDVKAVEMEAAAIAQVAYQFDIPFLIIRAISDLANQEATISFDEFIHLAAKQSATCIIELLKTI
3MMS Chain:A ((1-229))
MKIGIIAAMPEELAYLVQHLDNAQEQVVLGNTYHTGTIVSHEVVLVESGIGKVMSAMSVAILAVHFQVDALINTGSAGAVAEGIAVGDVVIADKLAYHDVDVTAFGYAYGQMAQQPLYFESDKTFVAQ----IQESL----QNWHLGLIATGDSFVAGNDKIEAIKSHFPEVLAVEMEGAAIAQAAHALNLPVLVIRAMSDNANHEANIFFDEFIIEAGRRSAQVLLAFLKAL
General information:
TITO was launched using:
RESULT:
Template:
3MMS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -172874 for 2041 contacts (-84.7/contact) +
2D Compatibility (PS) -24581 + (NN) -14194 + (LL) 776
1D Compatibility (HY) -22400 + (ID) 5450
Total energy: -238723.0 ( -116.96 by residue)
QMean score : 0.661
(partial model without unconserved sides chains):
PDB file :
Tito_3MMS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MMS-query.scw
PDB file :
Tito_Scwrl_3MMS.pdb
: