Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKVRGFEVVNEASRKFPE--QTISLPIRGDKGSAGYDFFSNE----TVTIVPGEKHIFWTDIKSYMQEDEVLNIYVRSSIGIKKGLLLCNGTGIIDSSYYSNPGNDGNIGIAIKNFSNEPVSIEAGERVAQGVFQKYLVADTDI---VANESRVGGVGSTGR
3MDX Chain:A ((35-172))
--------------IRLEHAKGLDLPAYETAGSAGMDLRAAVAEDRQIVLLPGRRTLVPTGLILEIPQGYEVQIRPRSGLAFKNGITCLNTPGTIDSDYR------GEVKVLLINLGDDDFRIERGMRIAQAVFAPVIQPKIEERAK----RGAGGF-----
General information:
TITO was launched using:
RESULT:
Template:
3MDX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48881 for 801 contacts (-61.0/contact) +
2D Compatibility (PS) -13638 + (NN) -4424 + (LL) 784
1D Compatibility (HY) -7200 + (ID) 1700
Total energy: -75059.0 ( -93.71 by residue)
QMean score : 0.399
(partial model without unconserved sides chains):
PDB file :
Tito_3MDX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MDX-query.scw
PDB file :
Tito_Scwrl_3MDX.pdb
: