Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------MKHLFKLDPAKNLPTNDVTKLIHSGTDGFIIGGTDNVQIEAVQNLYELLVETDLPIFLEISNESMILPEADHFLIPVVLNTENSKWTHGLHKELIKEMGEFIPWKRVTSEGYVILNKDAKVAHLTEAKTDLTDEDIVAYARLAENIFHLPIFYVEYSGMYGDPEVVRKASAALSNTKFWYGGGIRSKEQAAEMAKYADTIIVGNIIYEDLEKALETATIFRKKTV
1VIZ Chain:A ((2-230))
SLYDVTEWKHVFKLDPNKDLPDEQLEILCESGTDAVIIGGTEDNVLRMMSKVRR----FLVPCVLEVSAIEAIVPGFDLYFIPSVLNSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSEL-LQLPIFYLEYSGVLGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAEHADVIVVGNAVYEDFDRALKTVAAVKGE--
General information:
TITO was launched using:
RESULT:
Template:
1VIZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140605 for 1855 contacts (-75.8/contact) +
2D Compatibility (PS) -23374 + (NN) -6134 + (LL) 1096
1D Compatibility (HY) -22400 + (ID) 4900
Total energy: -196317.0 ( -105.83 by residue)
QMean score : 0.661
(partial model without unconserved sides chains):
PDB file :
Tito_1VIZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VIZ-query.scw
PDB file :
Tito_Scwrl_1VIZ.pdb
: