Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MNKPIIALDFQTYEEVETFLAKFSGETLSVKVGMELFYSNGP----VIVEKIKQQNHEIFLDLKLHDIPNTVKSAMIG-LAKLGVDMVNVHAAGGKKMMEAAKEGLEIGSPSGKRP-KIIAVTQLTSTSETDMQTEQLIKTSLLESVMHYSNLSKQAGLDGVVCSALEAEDIKQQNGADFLRVTPGIRLASDTADDQIRVVTPEKARLIGSSNIVVGRSITRA-NDPVAAYNQVLKEWNA-
1DBT Chain:A ((1-237))
MKNNLPIIALDFASAEETLAFLAPFQQEPLFVKVGMELFYQEGPSIVKQLKER----NCELFLDLKLHDIPTTVNKAMK-RLASLGVDLVNVHAAGGKKMMQAALEGLEEGTPAGKKRPSLIAVTQLTSTSEQIMKDELLIEKSLIDTVVHYSKQAEESGLDGVVCSVHEAKAIYQAVSPSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSITKAE-DPVKAYKAVRLEWEGI
General information:
TITO was launched using:
RESULT:
Template:
1DBT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89370 for 1886 contacts (-47.4/contact) +
2D Compatibility (PS) -24794 + (NN) -11275 + (LL) 256
1D Compatibility (HY) -20400 + (ID) 7150
Total energy: -152733.0 ( -80.98 by residue)
QMean score : 0.545
(partial model without unconserved sides chains):
PDB file :
Tito_1DBT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DBT-query.scw
PDB file :
Tito_Scwrl_1DBT.pdb
: