Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGQLFNLPQVEDIN---YIQTVRAVRKFFKDYLMLRVMAGSRKLPTMT----------TTYKLTPPNFSNEFHSKVEDAA------------IHNVDNVHAAQEAVKKYDAILNQLEHIHRKILF--EKFIHNLQDITIMLDIPYEERQYKREKRKAVIELATTLGIEVLN
4J1V Chain:A ((9-180))
LRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTEASCPVMSAGPRYEYHWADPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHIYHQHFDSVMQLQEEAHLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKLG-----
General information:
TITO was launched using:
RESULT:
Template:
4J1V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28016 for 939 contacts (-29.8/contact) +
2D Compatibility (PS) -14362 + (NN) -3221 + (LL) 596
1D Compatibility (HY) -6800 + (ID) 1300
Total energy: -53103.0 ( -56.55 by residue)
QMean score : 0.439
(partial model without unconserved sides chains):
PDB file :
Tito_4J1V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4J1V-query.scw
PDB file :
Tito_Scwrl_4J1V.pdb
: