Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYPQLSKEVAPNEIEAEMITNRGTIRIKLFPEIAPKTVENFVT----------HSKNGYYDGLIFHRVIPEFMIQGGD-PDGRGTGGESIWGESFEDEFSTEAFNLRGALSMANAGPNTNGSQFFIVQKPDMPADMLGQMEQAGFPVEVIEAYKQGGTPWLDGRHTVFGHVIEGMDVVDEIANLPTGMQD-KPVNDVVIEKINIK
2POY Chain:A ((31-181))
--------------------TPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRGDGTGGESIYG-KFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVP---------------------------CPWLDGKHVVFGKVLEGMEVVKSIEKC--GSQNGKPTKSVCI------
General information:
TITO was launched using:
RESULT:
Template:
2POY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55049 for 1033 contacts (-53.3/contact) +
2D Compatibility (PS) -14600 + (NN) -6909 + (LL) 4072
1D Compatibility (HY) -10400 + (ID) 3850
Total energy: -86736.0 ( -83.97 by residue)
QMean score : 0.544
(partial model without unconserved sides chains):
PDB file :
Tito_2POY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2POY-query.scw
PDB file :
Tito_Scwrl_2POY.pdb
: