Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNKLNEALKKAERIVFLTGAGVSVPSGIPDYRSKNGLY-----AGMSSPEYMLSHTCLVREPEKFYQFVTENMYYPNAVPNVIHKKMAEIETE-----KDVTIITQNIDGLHEKAGSKKVVNFHGSLYHCYCQNCGM----------------------TVTAK---DYLKSDIHTDCGGVIRPDVVLYEEAISESAIDQSLTAIRKADLIVIVGTSFRVSPFCNLTDYRNKKARIFAVNKERISLPYPFEMMESDAVKVFEEI
4UTR Chain:A ((13-231))LTAFREHFAKAKHIAIITGAGVSAESGVPTFRGPGGFWRKWQAQDLATPEAFSRDPSLVWE---FYHYRREVMR--SKMPNPAHLAIAECEARLGQQGRSVVIITQNIDELHHRAGSKHVYEIHGSLFKTRCMSCGEVKANHKSPICPALDGKGAPDPNTKEARIPVELLPRCERKSCNGLLRPHVVWFGETLDSDILTAVERELEKCDLCLVVGTSSIVYP------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 4UTR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68754 for 1289 contacts (-53.3/contact) +
2D Compatibility (PS) -19849 + (NN) -5752 + (LL) 3536
1D Compatibility (HY) -14400 + (ID) 3550
Total energy: -108769.0 ( -84.38 by residue)
QMean score : 0.509

(partial model without unconserved sides chains):
PDB file : Tito_4UTR.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4UTR-query.scw
PDB file : Tito_Scwrl_4UTR.pdb: